CompBioMethods
A comparison of statistical methods for analyzing mass spectrometry data
Analysis of mass spectrometry data with t.test, lm or limma.
Confidence Intervals in linear regression
In this post I compare base graphics and ggplot for drawing confidence intervals in linear regression.
R Base Graphics Tutorial
This tutorial helps to build R base graphics functions for plotting results of differential expression analysis by DESeq2. The final functions are part of HelpersforDESeq2 package (under development).
Determining NFR width by cross-correlation
Here I use a cross-correlation method to determine the width of nucleosome-free regions in MNase-seq data.
Generalized Linear Mixed Effect Models
Demonstration of Generalized Linear Mixed Effect Models on microscopy data, where datapoints (cells) on a microscopy slide might not be independent.
Data Binning and Correlation
Averaging data in equal sized bins falsifies weak assosciations to strong.
K-Means Clustering - Female/Male Embryos
Drosophila female and male embryos can be distinguished using k-means clustering on marker genes from RNA-seq data.
Welcome to CompBioMethods
Welcome to the new blog format of CompBioMethods.